: It provided robust implementations of methods like Neighbor-Joining, UPGMA, and Maximum Parsimony to visualize how species or genes diverged over time.
: It combined sequence alignment (via ClustalW), data exploration, and tree building into a single user-friendly interface. MEGA 3.0
(PDF) Mega-Essay as an Integrated Format in Modern Literature : It provided robust implementations of methods like
: The software introduced ways to test evolutionary hypotheses, such as the Z-test for positive selection and bootstrap resampling to check tree reliability. Writing a MEGA 3.0 Essay MEGA 3.0