SAW count : Performs the primary gene counting and spatial mapping. SAW realign : Adjusts data alignment if necessary.
Example Singularity command: $ singularity build SAW_v6.1.sif docker://stomics/saw:06.1.0 . FГЎjl: SAW.zip ...
: Use a tool like WinZip or built-in system tools to extract the files. Windows : Right-click the file and select "Extract All...". Linux/Command Line : Use unzip SAW.zip . SAW count : Performs the primary gene counting
Once installed, the workflow typically follows these phases as detailed in the : : Use a tool like WinZip or built-in
: Gather your Stereo-seq raw data (FASTQ files) and reference genomes.
The SAW software is designed to map spatial gene expression data. To use the contents of a .zip archive like SAW.zip , follow these steps:
: Ensure the file is not a double-extension executable like SAW.zip.exe by enabling "File name extensions" in your system settings.